Identification of key of transposable elements associated with myocarditis based on RNA and single-cell sequencing data mining
Published 19 May, 2024
Regarded historically as genomic parasites, transposable elements (TEs) have now been recognized as significant contributors to cellular identity and function, especially in immune regulation.
Mammalian genomes contain a vast number of TEs The diversity and abundance of these elements impact the structure, function and evolution of the genome. They influence gene regulatory networks by altering transcription factor binding sites and creating new enhancer activities. Increasingly, there is evidence that underscores the crucial role of TEs in various diseases, especially in modulating immunity. However, in the context of myocarditis, there has been a notable lack of focus on the impact of TEs, highlighting a potential research area that could provide new insights into the molecular mechanisms driving this cardiac disease.
In a study published in the KeAi journal Reproduction and Breeding, a team of researchers from Hunan Normal University utilized RNA-Seq and single-cell RNA-Seq data to identify key TEs associated with myocarditis.
The team used publicly available databases to explore the role of TEs in myocarditis.RNA Seq data and single-cell sequencing data were analyzed, with a focus on the mouse model of experimental autoimmune myocarditis (EAM). The RNA-Seq analysis revealed substantial upregulation of a range of immune genes in cardiac tissue.
“We furthered the investigation using single-cell sequencing of cardiac immune cells identified specific expression of certain transposable elements (TEs) across different types of immune cells in the heart,” shares first author of the study, Sixing Chen. “We observed an overall increase in the expression of the ERVB7-1.”
LTR-MM transposon across various cells in the EAM model suggest a widespread impact of this transposon on the immune response in this disease context.
“Our findings highlight the intricate interaction between TEs and the immune system in cardiomyopathy, providing new insights into the molecular mechanisms underlying this condition,” adds Chen.
In particularly, the discovery of specific TEs expression in cardiac immune cells and the overall increase in ERVB7-1. LTR-MM expression across the EAM model underscore the potential of these elements in modulating immune responses and contribute to our understanding of cardiomyopathy's pathogenesis. These observations open avenues for further research into the role of TEs in cardiac diseases, optimizing novel therapeutic strategies.
Contact author name, affiliation, email address:
Yuequn Wang
The Center for Heart Development, State Key Laboratory of Developmental Biology of Freshwater Fish, College of Life Sciences, Hunan Normal University
Funder:
The present study was funded by National Natural Science Foundation of China (Nos: 31872315, 81970324, 81700338, 81800289, 81670290）；the Hunan Provincial Natural Science Foundation of China (No. 2023JJ30396) and Key Projects of Hunan Provincial Department of Education (No.23A0082).
Conflict of interest:
All the authors declare that they have no competing interests.
See the article:
Yuequn Wang., et al., Identification of key TE associated with myocarditis based on RNA and single-cell sequencing data mining, Reproduction and Breeding, Volume 4, Issue 2, 2024, Pages 102-109, https://doi.org/10.1016/j.repbre.2024.03.001.